Molecular sequence classification using efficient kernel based embedding
Ali et al. Information Sciences (2024)
PseAAC2Vec protein encoding for TCR protein sequence classification
Tayebi et al. Computers in Biology and Medicine (2024)
Spike2CGR: An efficient method for spike sequence classification using chaos game representation
Murad et al. Machine Learning (2023)
Benchmarking machine learning robustness in Covid-19 genome sequence classification
Ali et al. Scientific Reports (2023)
Effective Clustering for Single Cell Sequencing Cancer Data
Ciccolella et al. IEEE Journal of Biomedical and Health Informatics (2021)
WhatsHap: Weighted haplotype assembly for future-generation sequencing reads
Patterson et al. Journal of Computational Biology (2015)
From alpha to zeta: Identifying variants and subtypes of SARS-CoV-2 via clustering
Melnyk et al. Journal of Computational Biology (2021)
Efficient approximate kernel based spike sequence classification
Ali et al. Transactions on Computational Biology and Bioinformatics (2022)
ViralVectors: Compact and scalable alignment-free virome feature generation
Ali et al. Medical & Biological Engineering & Computing (2023)
Exploring the potential of GANs in biological sequence analysis
Murad et al. MDPI Biology (2023)
Efficient analysis of COVID-19 clinical data using machine learning models
Ali et al. Medical & Biological Engineering & Computing (2021)
Simpler and faster development of tumor phylogeny pipelines
Ali et al. Journal of Computational Biology (2021)
From PDB files to protein features: a comparative analysis of PDB bind and STCRDAB datasets
Ali et al. Medical & Biological Engineering & Computing (2024)
When protein structure embedding meets large language models
Ali et al. MDPI Genes (2023)
Improving ISOMAP efficiency with RKS: A comparative study with t-distributed neighbor embedding on protein sequences
Ali et al. MDPI J (2023)
Assessing the resilience of machine learning classification algorithms on SARS-CoV-2 genome sequences generated with long-read specific errors
Sahoo et al. Biomolecules (2023)
Reads2Vec: Efficient embedding of raw high-throughput sequencing reads data
Chourasia et al. Journal of Computational Biology (2022)
Characterizing SARS-CoV-2 spike sequences based on geographical location
Ali et al. Journal of Computational Biology (2022)
PWM2Vec: An efficient embedding approach for viral host specification from coronavirus spike sequences
Ali et al. MDPI Biology (2022)
Robust representation and efficient feature selection allows for effective clustering of SARS-CoV-2 variants
Tayebi et al. Algorithms (2021)
For a full list, please go to Google Scholar.